IL_8CMJ_019

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

8CMJ|1|AA|G|494

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|C|435
8CMJ|1|AA|A|436
8CMJ|1|AA|G|437
8CMJ|1|AA|A|438
8CMJ|1|AA|G|494
8CMJ|1|AA|G|495
*
8CMJ|1|AA|C|618
8CMJ|1|AA|A|619
8CMJ|1|AA|U|620
8CMJ|1|AA|A|621
8CMJ|1|AA|A|622
8CMJ|1|AA|U|623
8CMJ|1|AA|G|624

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain II

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L32

Chain R

60S ribosomal protein L33-A