IL_8CMJ_027

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

8CMJ|1|AA|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_027 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.1729

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8CMJ|1|AA|A|755
8CMJ|1|AA|U|756
*
8CMJ|1|AA|A|775
8CMJ|1|AA|U|776
8CMJ|1|AA|U|777

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain N

60S ribosomal protein L29

Chain OO

60S ribosomal protein L13-A