3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GU*GGC
Length
5 nucleotides
Bulged bases
8CMJ|1|AA|G|860
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_032 not in the Motif Atlas
Homologous match to IL_8C3A_032
Geometric discrepancy: 0.1286
The information below is about IL_8C3A_032
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

8CMJ|1|AA|G|833
8CMJ|1|AA|U|834
*
8CMJ|1|AA|G|859
8CMJ|1|AA|G|860
8CMJ|1|AA|C|861

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L19-A
Chain EE
60S ribosomal protein L2-A
Chain b
60S ribosomal protein L43-A

Coloring options:


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