IL_8CMJ_039

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8CMJ|1|AA|U|979, 8CMJ|1|AA|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|C|977
8CMJ|1|AA|G|978
8CMJ|1|AA|U|979
8CMJ|1|AA|A|980
8CMJ|1|AA|U|981
8CMJ|1|AA|C|982
*
8CMJ|1|AA|G|1101
8CMJ|1|AA|A|1102
8CMJ|1|AA|A|1103
8CMJ|1|AA|G|1104

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain JJ

60S ribosomal protein L7-A

Chain N

60S ribosomal protein L29