IL_8CMJ_044

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_044 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1593

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8CMJ|1|AA|A|1006
8CMJ|1|AA|U|1007
8CMJ|1|AA|U|1008
8CMJ|1|AA|A|1009
*
8CMJ|1|AA|U|1041
8CMJ|1|AA|U|1042
8CMJ|1|AA|C|1043
8CMJ|1|AA|U|1044

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10