IL_8CMJ_047

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_047 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.1865

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8CMJ|1|AA|G|1021
8CMJ|1|AA|U|1022
8CMJ|1|AA|C|1023
*
8CMJ|1|AA|G|1029
8CMJ|1|AA|A|1030
8CMJ|1|AA|C|1031

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain NN

60S ribosomal protein L11-A