IL_8CMJ_061

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8CMJ|1|AA|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_061 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1717

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8CMJ|1|AA|G|1262
8CMJ|1|AA|A|1263
8CMJ|1|AA|G|1264
8CMJ|1|AA|U|1265
8CMJ|1|AA|G|1266
*
8CMJ|1|AA|C|1275
8CMJ|1|AA|U|1276
8CMJ|1|AA|C|1277

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A