3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GCC*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_069 not in the Motif Atlas
Geometric match to IL_5J7L_050
Geometric discrepancy: 0.3302
The information below is about IL_5J7L_050
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8CMJ|1|AA|G|1561
8CMJ|1|AA|C|1562
8CMJ|1|AA|C|1563
*
8CMJ|1|AA|G|1577
8CMJ|1|AA|C|1578
8CMJ|1|AA|C|1579

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain CC
5.8S ribosomal RNA; 5.8S rRNA
Chain EE
60S ribosomal protein L2-A
Chain J
60S ribosomal protein L25
Chain KK
60S ribosomal protein L8-A

Coloring options:


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