IL_8CMJ_091

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8CMJ|1|AA|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_091 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.2612

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8CMJ|1|AA|U|2200
8CMJ|1|AA|G|2201
*
8CMJ|1|AA|U|2241
8CMJ|1|AA|A|2242
8CMJ|1|AA|A|2243
8CMJ|1|AA|A|2244

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain c

Small subunit ribosomal RNA; SSU rRNA