3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_095 not in the Motif Atlas
Geometric match to IL_5TBW_089
Geometric discrepancy: 0.1264
The information below is about IL_5TBW_089
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

8CMJ|1|AA|G|2276
8CMJ|1|AA|C|2277
*
8CMJ|1|AA|G|2307
8CMJ|1|AA|C|2308
8CMJ|1|AA|A|2309
8CMJ|1|AA|U|2310

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain Z
60S ribosomal protein L41
Chain c
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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