IL_8CMJ_095
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GC*GCAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_095 not in the Motif Atlas
- Geometric match to IL_5TBW_089
- Geometric discrepancy: 0.1264
- The information below is about IL_5TBW_089
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_22551.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
8CMJ|1|AA|G|2276
8CMJ|1|AA|C|2277
*
8CMJ|1|AA|G|2307
8CMJ|1|AA|C|2308
8CMJ|1|AA|A|2309
8CMJ|1|AA|U|2310
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Z
- 60S ribosomal protein L41
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: