IL_8CMJ_102

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8CMJ|1|AA|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_102 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1134

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8CMJ|1|AA|U|2423
8CMJ|1|AA|A|2424
8CMJ|1|AA|G|2425
*
8CMJ|1|AA|U|2604
8CMJ|1|AA|G|2605
8CMJ|1|AA|G|2606
8CMJ|1|AA|G|2607

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L42-A