IL_8CMJ_103

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_103 not in the Motif Atlas

Geometric match to IL_1S03_004

Geometric discrepancy: 0.1787

The information below is about IL_1S03_004

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8CMJ|1|AA|C|2444
8CMJ|1|AA|A|2445
*
8CMJ|1|AA|U|2501
8CMJ|1|AA|A|2502
8CMJ|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A