IL_8CMJ_138

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_138 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2175

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8CMJ|1|AA|C|3221
8CMJ|1|AA|U|3222
8CMJ|1|AA|A|3223
*
8CMJ|1|AA|U|3262
8CMJ|1|AA|G|3263
8CMJ|1|AA|G|3264

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain II

60S ribosomal protein L6-A

Chain PP

60S ribosomal protein L14-A