IL_8CMJ_171

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CMJ|1|c|U|144, 8CMJ|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_171 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.3546

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8CMJ|1|c|G|142
8CMJ|1|c|G|143
8CMJ|1|c|U|144
8CMJ|1|c|A|145
8CMJ|1|c|U|146
8CMJ|1|c|A|147
8CMJ|1|c|A|148
8CMJ|1|c|C|149
*
8CMJ|1|c|G|165
8CMJ|1|c|C|166
8CMJ|1|c|U|167
8CMJ|1|c|A|168
8CMJ|1|c|A|169
8CMJ|1|c|U|170
8CMJ|1|c|A|171
8CMJ|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A