IL_8CMJ_179
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 8CMJ|1|c|U|320, 8CMJ|1|c|C|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_179 not in the Motif Atlas
- Geometric match to IL_4ERD_001
- Geometric discrepancy: 0.2219
- The information below is about IL_4ERD_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8CMJ|1|c|U|318
8CMJ|1|c|U|319
8CMJ|1|c|U|320
8CMJ|1|c|C|321
8CMJ|1|c|G|322
8CMJ|1|c|A|323
*
8CMJ|1|c|U|345
8CMJ|1|c|G|346
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein L19-A
- Chain l
- 40S ribosomal protein S8-B
- Chain o
- 40S ribosomal protein S11-A
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