IL_8CMJ_187

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAG*CGAGG(A2M)AC

Length

11 nucleotides

Bulged bases

8CMJ|1|c|G|539

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_187 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2586

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8CMJ|1|c|G|514
8CMJ|1|c|A|515
8CMJ|1|c|G|516
*
8CMJ|1|c|C|536
8CMJ|1|c|G|537
8CMJ|1|c|A|538
8CMJ|1|c|G|539
8CMJ|1|c|G|540
8CMJ|1|c|A2M|541
8CMJ|1|c|A|542
8CMJ|1|c|C|543

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A