IL_8CMJ_205
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8CMJ|1|c|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_205 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3399
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8CMJ|1|c|U|893
8CMJ|1|c|U|894
8CMJ|1|c|G|895
8CMJ|1|c|U|896
8CMJ|1|c|C|897
8CMJ|1|c|A|898
8CMJ|1|c|G|899
*
8CMJ|1|c|C|910
8CMJ|1|c|U|911
8CMJ|1|c|U|912
8CMJ|1|c|G|913
8CMJ|1|c|G|914
8CMJ|1|c|A|915
8CMJ|1|c|U|916
8CMJ|1|c|U|917
8CMJ|1|c|U|918
8CMJ|1|c|A|919
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 40S ribosomal protein S1-A
- Chain q
- 40S ribosomal protein S14-A
Coloring options: