3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
8CMJ|1|c|U|1052
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CMJ|1|c|G|1051
8CMJ|1|c|U|1052
8CMJ|1|c|G|1053
*
8CMJ|1|c|C|1066
8CMJ|1|c|C|1067

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 3
40S ribosomal protein S27-A
Chain e
40S ribosomal protein S1-A

Coloring options:

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