IL_8CMJ_221
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 8CMJ|1|c|U|1432, 8CMJ|1|c|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_221 not in the Motif Atlas
- Geometric match to IL_5J7L_010
- Geometric discrepancy: 0.3132
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8CMJ|1|c|U|1276
8CMJ|1|c|G|1277
8CMJ|1|c|G|1278
8CMJ|1|c|C|1279
*
8CMJ|1|c|G|1429
8CMJ|1|c|U|1430
8CMJ|1|c|C|1431
8CMJ|1|c|U|1432
8CMJ|1|c|G|1433
8CMJ|1|c|U|1434
8CMJ|1|c|G|1435
8CMJ|1|c|A|1436
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain g
- RPS3 isoform 1
- Chain n
- 40S ribosomal protein S10-A
- Chain w
- 40S ribosomal protein S20
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