IL_8CMJ_229

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGUGCUAG*CUGGUUAUCC

Length

18 nucleotides

Bulged bases

8CMJ|1|c|U|1370, 8CMJ|1|c|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|c|G|1351
8CMJ|1|c|G|1352
8CMJ|1|c|U|1353
8CMJ|1|c|G|1354
8CMJ|1|c|C|1355
8CMJ|1|c|U|1356
8CMJ|1|c|A|1357
8CMJ|1|c|G|1358
*
8CMJ|1|c|C|1365
8CMJ|1|c|U|1366
8CMJ|1|c|G|1367
8CMJ|1|c|G|1368
8CMJ|1|c|U|1369
8CMJ|1|c|U|1370
8CMJ|1|c|A|1371
8CMJ|1|c|U|1372
8CMJ|1|c|C|1373
8CMJ|1|c|C|1374

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S16-A

Chain v

40S ribosomal protein S19-A

Chain w

40S ribosomal protein S20