IL_8CMJ_233
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8CMJ|1|c|A|1516, 8CMJ|1|c|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_233 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.4899
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CMJ|1|c|G|1488
8CMJ|1|c|U|1489
8CMJ|1|c|C|1490
8CMJ|1|c|U|1491
8CMJ|1|c|A|1492
8CMJ|1|c|A|1493
8CMJ|1|c|C|1494
*
8CMJ|1|c|G|1513
8CMJ|1|c|U|1514
8CMJ|1|c|A|1515
8CMJ|1|c|A|1516
8CMJ|1|c|U|1517
8CMJ|1|c|C|1518
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain g
- RPS3 isoform 1
- Chain v
- 40S ribosomal protein S19-A
- Chain w
- 40S ribosomal protein S20
Coloring options: