IL_8CMJ_235

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_235 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.3023

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CMJ|1|c|G|1498
8CMJ|1|c|G|1499
8CMJ|1|c|C|1500
*
8CMJ|1|c|G|1507
8CMJ|1|c|U|1508
8CMJ|1|c|C|1509

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S15

Chain v

40S ribosomal protein S19-A