IL_8CMJ_248

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_248 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2479

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8CMJ|1|c|U|1669
8CMJ|1|c|G|1670
8CMJ|1|c|A|1671
8CMJ|1|c|G|1672
*
8CMJ|1|c|C|1729
8CMJ|1|c|A|1730
8CMJ|1|c|A|1731
8CMJ|1|c|A|1732

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain j

40S ribosomal protein S6-A

Chain l

40S ribosomal protein S8-B