IL_8CMJ_254
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- 8CMJ|1|AA|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_254 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2398
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CMJ|1|AA|U|32
8CMJ|1|AA|G|33
8CMJ|1|AA|A|34
8CMJ|1|AA|A|35
8CMJ|1|AA|C|36
8CMJ|1|AA|U|37
8CMJ|1|AA|U|38
*
8CMJ|1|AA|A|45
8CMJ|1|AA|U|46
8CMJ|1|AA|C|47
8CMJ|1|AA|A|48
8CMJ|1|AA|A|49
8CMJ|1|AA|U|50
8CMJ|1|AA|A|51
8CMJ|1|AA|A|52
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: