3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GGAA*U(OMC)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_266 not in the Motif Atlas
Homologous match to IL_8C3A_082
Geometric discrepancy: 0.1577
The information below is about IL_8C3A_082
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

8CMJ|1|AA|G|1898
8CMJ|1|AA|G|1899
8CMJ|1|AA|A|1900
8CMJ|1|AA|A|1901
*
8CMJ|1|AA|U|2336
8CMJ|1|AA|OMC|2337

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain FF
60S ribosomal protein L3
Chain H
60S ribosomal protein L23-A

Coloring options:


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