IL_8CMJ_266
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GGAA*U(OMC)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_266 not in the Motif Atlas
- Homologous match to IL_8C3A_082
- Geometric discrepancy: 0.1577
- The information below is about IL_8C3A_082
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
8CMJ|1|AA|G|1898
8CMJ|1|AA|G|1899
8CMJ|1|AA|A|1900
8CMJ|1|AA|A|1901
*
8CMJ|1|AA|U|2336
8CMJ|1|AA|OMC|2337
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
Coloring options: