IL_8CMJ_270

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CMJ|1|AA|U|2453, 8CMJ|1|AA|A|2458, 8CMJ|1|AA|A|2459, 8CMJ|1|AA|U|2460, 8CMJ|1|AA|A|2468, 8CMJ|1|AA|U|2487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|G|2452
8CMJ|1|AA|U|2453
8CMJ|1|AA|G|2454
8CMJ|1|AA|U|2455
8CMJ|1|AA|A|2456
8CMJ|1|AA|G|2457
8CMJ|1|AA|A|2458
8CMJ|1|AA|A|2459
8CMJ|1|AA|U|2460
8CMJ|1|AA|A|2461
8CMJ|1|AA|A|2462
8CMJ|1|AA|G|2463
8CMJ|1|AA|U|2464
8CMJ|1|AA|G|2465
8CMJ|1|AA|G|2466
8CMJ|1|AA|G|2467
8CMJ|1|AA|A|2468
8CMJ|1|AA|G|2469
*
8CMJ|1|AA|C|2476
8CMJ|1|AA|G|2477
8CMJ|1|AA|C|2478
8CMJ|1|AA|C|2479
8CMJ|1|AA|A|2480
8CMJ|1|AA|G|2481
8CMJ|1|AA|U|2482
8CMJ|1|AA|G|2483
8CMJ|1|AA|A|2484
8CMJ|1|AA|A|2485
8CMJ|1|AA|A|2486
8CMJ|1|AA|U|2487
8CMJ|1|AA|A|2488
8CMJ|1|AA|C|2489
8CMJ|1|AA|C|2490
8CMJ|1|AA|A|2491
8CMJ|1|AA|C|2492
8CMJ|1|AA|U|2493
8CMJ|1|AA|A|2494
8CMJ|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains