IL_8CMJ_272

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUGGC*GCUUUUU

Length

12 nucleotides

Bulged bases

8CMJ|1|AA|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|G|2828
8CMJ|1|AA|U|2829
8CMJ|1|AA|G|2830
8CMJ|1|AA|G|2831
8CMJ|1|AA|C|2832
*
8CMJ|1|AA|G|2856
8CMJ|1|AA|C|2857
8CMJ|1|AA|U|2858
8CMJ|1|AA|U|2859
8CMJ|1|AA|U|2860
8CMJ|1|AA|U|2861
8CMJ|1|AA|U|2862

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain FF

60S ribosomal protein L3

Chain MM

60S ribosomal protein L10