IL_8CMJ_278

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAU*(A2M)AGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_278 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3596

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8CMJ|1|c|C|411
8CMJ|1|c|A|412
8CMJ|1|c|U|413
*
8CMJ|1|c|A2M|420
8CMJ|1|c|A|421
8CMJ|1|c|G|422
8CMJ|1|c|G|423

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A