IL_8CMJ_287
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- (4AC)G*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 8CMJ|1|c|A|1427
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_287 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1894
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8CMJ|1|c|4AC|1280
8CMJ|1|c|G|1281
*
8CMJ|1|c|C|1426
8CMJ|1|c|A|1427
8CMJ|1|c|OMG|1428
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain f
- 40S ribosomal protein S2
- Chain g
- RPS3 isoform 1
- Chain w
- 40S ribosomal protein S20
Coloring options: