IL_8CRE_030

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

8CRE|1|1|A|929, 8CRE|1|1|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CRE|1|1|G|801
8CRE|1|1|A|802
8CRE|1|1|A|803
8CRE|1|1|A|804
8CRE|1|1|G|805
*
8CRE|1|1|C|927
8CRE|1|1|U|928
8CRE|1|1|A|929
8CRE|1|1|G|930
8CRE|1|1|U|931
8CRE|1|1|A|932
8CRE|1|1|G|933
8CRE|1|1|C|934

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AK

60S ribosomal protein L37-B

Chain l

60S ribosomal protein L4-B

Chain t

60S ribosomal protein L13

Chain v

60S ribosomal protein L15-A