IL_8CRE_041

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CRE|1|1|G|987
8CRE|1|1|A|988
8CRE|1|1|G|989
8CRE|1|1|G|990
8CRE|1|1|U|991
8CRE|1|1|A|992
8CRE|1|1|A|993
*
8CRE|1|1|U|1048
8CRE|1|1|A|1049
8CRE|1|1|A|1050
8CRE|1|1|A|1051
8CRE|1|1|U|1052
8CRE|1|1|A|1053
8CRE|1|1|U|1054

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain o

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L10