IL_8CRE_046

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCUUG*UAAC

Length

10 nucleotides

Bulged bases

8CRE|1|1|C|1011, 8CRE|1|1|U|1012, 8CRE|1|1|U|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_046 not in the Motif Atlas

Homologous match to IL_8C3A_046

Geometric discrepancy: 0.0627

The information below is about IL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53206.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8CRE|1|1|G|1009
8CRE|1|1|U|1010
8CRE|1|1|C|1011
8CRE|1|1|U|1012
8CRE|1|1|U|1013
8CRE|1|1|G|1014
*
8CRE|1|1|U|1030
8CRE|1|1|A|1031
8CRE|1|1|A|1032
8CRE|1|1|C|1033

Current chains

Chain 1

25S

Nearby chains

Chain i

60S ribosomal protein CAALFM_C304810CA

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10