IL_8CRE_082

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8CRE|1|1|G|1894
8CRE|1|1|G|1895
8CRE|1|1|A|1896
8CRE|1|1|A|1897
8CRE|1|1|G|1898
8CRE|1|1|U|1899
8CRE|1|1|C|1900
8CRE|1|1|G|1901
8CRE|1|1|G|1902
*
8CRE|1|1|C|2311
8CRE|1|1|U|2312
8CRE|1|1|G|2313
8CRE|1|1|U|2314
8CRE|1|1|C|2315

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3