IL_8CRE_162

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_162 not in the Motif Atlas

Homologous match to IL_8C3A_012

Geometric discrepancy: 0.0483

The information below is about IL_8C3A_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8CRE|1|AS|C|177
8CRE|1|AS|U|178
*
8CRE|1|AS|A|236
8CRE|1|AS|U|237
8CRE|1|AS|G|238

Current chains

Chain AS

25S

Nearby chains

Chain 9

Ribosomal protein L24

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

60S ribosomal protein L13

Chain CC

Ribosomal protein L29

Chain CE

60S ribosomal protein L37-B