IL_8CRE_173
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAUGUGG*UGUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8CRE|1|AS|U|530, 8CRE|1|AS|U|556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_173 not in the Motif Atlas
- Homologous match to IL_8C3A_022
- Geometric discrepancy: 0.0592
- The information below is about IL_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CRE|1|AS|G|527
8CRE|1|AS|A|528
8CRE|1|AS|A|529
8CRE|1|AS|U|530
8CRE|1|AS|G|531
8CRE|1|AS|U|532
8CRE|1|AS|G|533
8CRE|1|AS|G|534
*
8CRE|1|AS|U|551
8CRE|1|AS|G|552
8CRE|1|AS|U|553
8CRE|1|AS|U|554
8CRE|1|AS|A|555
8CRE|1|AS|U|556
8CRE|1|AS|A|557
8CRE|1|AS|G|558
8CRE|1|AS|C|559
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BH
- 60S ribosomal protein L14-B
- Chain BN
- 60S ribosomal protein L20
Coloring options: