IL_8CRE_197

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

8CRE|1|AS|U|1012, 8CRE|1|AS|U|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_197 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.2905

The information below is about IL_7DLZ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8CRE|1|AS|U|1010
8CRE|1|AS|C|1011
8CRE|1|AS|U|1012
8CRE|1|AS|U|1013
8CRE|1|AS|G|1014
*
8CRE|1|AS|U|1030
8CRE|1|AS|A|1031
8CRE|1|AS|A|1032

Current chains

Chain AS

25S

Nearby chains

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BE

60S ribosomal protein L10

Chain CL

60S ribosomal protein CAALFM_C304810CA