IL_8CRE_206
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8CRE|1|AS|C|1192, 8CRE|1|AS|C|1197, 8CRE|1|AS|A|1298, 8CRE|1|AS|U|1301, 8CRE|1|AS|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_206 not in the Motif Atlas
- Homologous match to IL_8C3A_055
- Geometric discrepancy: 0.0375
- The information below is about IL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CRE|1|AS|G|1190
8CRE|1|AS|A|1191
8CRE|1|AS|C|1192
8CRE|1|AS|A|1193
8CRE|1|AS|C|1194
8CRE|1|AS|C|1195
8CRE|1|AS|A|1196
8CRE|1|AS|C|1197
8CRE|1|AS|A|1198
8CRE|1|AS|A|1199
8CRE|1|AS|A|1200
8CRE|1|AS|A|1201
*
8CRE|1|AS|U|1295
8CRE|1|AS|G|1296
8CRE|1|AS|A|1297
8CRE|1|AS|A|1298
8CRE|1|AS|A|1299
8CRE|1|AS|A|1300
8CRE|1|AS|U|1301
8CRE|1|AS|G|1302
8CRE|1|AS|G|1303
8CRE|1|AS|A|1304
8CRE|1|AS|U|1305
8CRE|1|AS|G|1306
8CRE|1|AS|G|1307
8CRE|1|AS|C|1308
8CRE|1|AS|G|1309
8CRE|1|AS|C|1310
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain AX
- 60S ribosomal protein L3
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BJ
- Ribosomal protein L13
- Chain CA
- 60S ribosomal protein L33-A
- Chain CH
- 60S ribosomal protein L40-B
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