IL_8CRE_234

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8CRE|1|AS|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_234 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.034

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8CRE|1|AS|A|1897
8CRE|1|AS|G|1898
8CRE|1|AS|U|1899
8CRE|1|AS|C|1900
8CRE|1|AS|G|1901
8CRE|1|AS|G|1902
*
8CRE|1|AS|C|2311
8CRE|1|AS|U|2312
8CRE|1|AS|G|2313
8CRE|1|AS|U|2314

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L23-A