IL_8CRE_261

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_261 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0486

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8CRE|1|AS|G|2795
8CRE|1|AS|G|2796
8CRE|1|AS|C|2797
8CRE|1|AS|U|2798
*
8CRE|1|AS|G|2835
8CRE|1|AS|A|2836
8CRE|1|AS|U|2837
8CRE|1|AS|U|2838
8CRE|1|AS|C|2839

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain BW

60S ribosomal protein L29