IL_8CRE_292

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8CRE|1|AS|U|3319, 8CRE|1|AS|U|3320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_292 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1079

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8CRE|1|AS|C|3314
8CRE|1|AS|C|3315
*
8CRE|1|AS|G|3318
8CRE|1|AS|U|3319
8CRE|1|AS|U|3320
8CRE|1|AS|G|3321

Current chains

Chain AS

25S

Nearby chains

Chain CV

40S ribosomal protein S8