IL_8CRE_299
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 8CRE|1|AT|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_299 not in the Motif Atlas
- Homologous match to IL_8C3A_149
- Geometric discrepancy: 0.0454
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8CRE|1|AT|A|84
8CRE|1|AT|G|85
8CRE|1|AT|U|86
8CRE|1|AT|G|87
*
8CRE|1|AT|C|94
8CRE|1|AT|A|95
8CRE|1|AT|U|96
Current chains
- Chain AT
- 5S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BN
- 60S ribosomal protein L20
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