IL_8CRE_326

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_326 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.046

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8CRE|1|B|C|441
8CRE|1|B|C|442
8CRE|1|B|A|443
8CRE|1|B|A|444
8CRE|1|B|U|445
*
8CRE|1|B|A|458
8CRE|1|B|G|459

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24