IL_8CRE_339
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_339 not in the Motif Atlas
- Homologous match to IL_8C3A_430
- Geometric discrepancy: 0.1232
- The information below is about IL_8C3A_430
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.2
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
8CRE|1|B|A|731
8CRE|1|B|C|732
*
8CRE|1|B|G|786
8CRE|1|B|A|787
8CRE|1|B|A|788
8CRE|1|B|U|789
Current chains
- Chain B
- 18S
Nearby chains
- Chain J
- 40S ribosomal protein S7
- Chain N
- 40S ribosomal protein S11A
- Chain Y
- 40S ribosomal protein S22-A
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: