Motif IL_68140.2 Version IL_68140.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	3-6	4-5
1	IL_1U9S_004	1U9S	0.4572	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	164	A	165	A	166	G	167	*	C	133	G	134	cWW		cSH	ncWB		cWW
2	IL_1U9S_002	1U9S	0.4959	1	Major groove intercalation	A	RIBONUCLEASE P	G	111	A	112	A	114	G	115	*	C	228	C	229	cWW					cWW
3	IL_7A0S_068	7A0S	0.3264	0	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1838	A	1839	A	1840	G	1841	*	C	1876	C	1877	cWW				ncWS	cWW
4	IL_8C3A_430	8C3A	0.2174	0	Major groove minor groove platform; mini C-loop	CM	SSU rRNA	G	786	A	787	A	788	U	789	*	A	731	C	732	cWW					cWW
5	IL_8P9A_412	8P9A	0.1662	0	Major groove minor groove platform; mini C-loop (H)	sR	SSU rRNA	G	802	A	803	A	804	U	805	*	A	746	C	747	cWW	cSH				cWW
6	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
7	IL_1S03_007	1S03	0.0307	0	Major groove minor groove platform; mini C-loop	B	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
8	IL_5J7L_029	5J7L	0.1026	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	cSH	ncSH		ncWS	cWW
9	IL_4LFB_025	4LFB	0.1286	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	ncSH	ncSH		ncWS	cWW
10	IL_4PDB_002	4PDB	0.1116	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	24	U	25	A	26	U	27	*	A	14	U	15	cWW	ncSH			ncWS	cWW
11	IL_1I6U_002	1I6U	0.1337	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	A	24	U	25	A	26	C	27	*	G	12	U	13	cWW	cSH	ncSH		ncWS	cWW
12	IL_6CZR_137	6CZR	0.2093	0	Major groove minor groove platform; mini C-loop	1a	SSU rRNA	A	624	U	625	A	626	C	627	*	G	581	U	582	ncWW		ncSH			cWW
13	IL_4WF9_126	4WF9	0.2524	0	Major groove minor groove platform; mini C-loop	Y	5S rRNA	G	49	A	50	A	51	G	52	*	C	28	C	29	ncWW	ncSH		ncWB	ncWS	cWW
14	IL_5J7L_357	5J7L	0.2723	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	ncSH	ncSH	ncWB	cWS	cWW
15	IL_4V9F_103	4V9F	0.2394	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	G	50	A	51	A	52	G	53	*	C	29	C	30	cWW	cSH		ncWB	cWS	cWW
16	IL_9DFE_112	9DFE	0.2280	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	cSH		ncWB	cWS	cWW
17	IL_5J7L_316	5J7L	0.2544	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	G	1846	A	1847	A	1848	G	1849	*	C	1893	C	1894	cWW	ncSH		ncWB	ncWS	cWW
18	IL_4WF9_072	4WF9	0.3786	0	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1873	A	1874	A	1875	G	1876	*	C	1920	C	1921	ncWW					cWW
19	IL_4V9F_068	4V9F	0.4557	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	G	1902	U	1903	A	1904	U	1905	*	A	1934	C	1935	cWW					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAG*CC	7
AUAC*GU	4
GAAU*AC	2
AAAC*GU	2
CAAG*CG	1
GAAAG*CC	1
AUAU*AU	1
GUAU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	12
UA*	6
AAA*	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform; mini C-loop (16)
Major groove minor groove platform; mini C-loop (H) (2)
Major groove intercalation (1)
Basepair signature: cWW-cSH-cWW
Heat map statistics: Min 0.03 | Avg 0.31 | Max 0.83

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Coloring options: Nucleotide numbers

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