IL_8CRE_340

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_340 not in the Motif Atlas

Homologous match to IL_8C3A_431

Geometric discrepancy: 0.0817

The information below is about IL_8C3A_431

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8CRE|1|B|U|733
8CRE|1|B|U|734
8CRE|1|B|U|735
*
8CRE|1|B|A|783
8CRE|1|B|U|784
8CRE|1|B|G|785

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain J

40S ribosomal protein S7

Chain N

40S ribosomal protein S11A

Chain Y

40S ribosomal protein S22-A