IL_8CRE_372

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUGC*GUAUAGUC

Length

13 nucleotides

Bulged bases

8CRE|1|B|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_372 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3309

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8CRE|1|B|G|1336
8CRE|1|B|C|1337
8CRE|1|B|U|1338
8CRE|1|B|G|1339
8CRE|1|B|C|1340
*
8CRE|1|B|G|1353
8CRE|1|B|U|1354
8CRE|1|B|A|1355
8CRE|1|B|U|1356
8CRE|1|B|A|1357
8CRE|1|B|G|1358
8CRE|1|B|U|1359
8CRE|1|B|C|1360

Current chains

Chain B

18S

Nearby chains

Chain S

40S ribosomal protein S16

Chain V

40S ribosomal protein S19-A

Chain W

Ribosomal protein S10