IL_8CRE_397

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8CRE|1|CM|G|109
8CRE|1|CM|U|110
8CRE|1|CM|U|111
8CRE|1|CM|A|112
*
8CRE|1|CM|U|300
8CRE|1|CM|U|301
8CRE|1|CM|U|302
8CRE|1|CM|C|303

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A