IL_8CRE_421

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8CRE|1|CM|A|548
8CRE|1|CM|G|549
8CRE|1|CM|G|550
8CRE|1|CM|G|551
8CRE|1|CM|C|552
8CRE|1|CM|A|553
8CRE|1|CM|A|554
8CRE|1|CM|G|555
*
8CRE|1|CM|C|585
8CRE|1|CM|U|586

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CP

Ribosomal protein S5

Chain CW

Ribosomal protein S4

Chain DR

40S ribosomal protein S30