IL_8CRE_436

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8CRE|1|CM|G|898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89047.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

Number of instances in this motif group

1

Unit IDs

8CRE|1|CM|U|878
8CRE|1|CM|U|879
8CRE|1|CM|G|880
8CRE|1|CM|U|881
8CRE|1|CM|C|882
8CRE|1|CM|A|883
8CRE|1|CM|G|884
*
8CRE|1|CM|C|895
8CRE|1|CM|U|896
8CRE|1|CM|U|897
8CRE|1|CM|G|898
8CRE|1|CM|G|899
8CRE|1|CM|A|900
8CRE|1|CM|U|901
8CRE|1|CM|U|902
8CRE|1|CM|U|903
8CRE|1|CM|A|904

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CO

40S ribosomal protein S1

Chain DB

40S ribosomal protein S14-A