IL_8CRE_442

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8CRE|1|CM|G|1096
8CRE|1|CM|G|1097
8CRE|1|CM|A|1098
8CRE|1|CM|G|1099
8CRE|1|CM|U|1100
8CRE|1|CM|A|1101
8CRE|1|CM|U|1102
8CRE|1|CM|G|1103
*
8CRE|1|CM|U|1114
8CRE|1|CM|G|1115
8CRE|1|CM|A|1116
8CRE|1|CM|A|1117
8CRE|1|CM|A|1118
8CRE|1|CM|C|1119

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)